Transcriptome sequencing and de novo analysis of the northern snakehead, Ophiocephalus argus

Northern snakehead, Ophiocephalus argus Cantor, is an endemic freshwater fish in China. However, wild stocks of O. argus are dwindling sharply. Further, water conservancy projects, environmental pollution and human activities have caused the decrease of wild stocks, which has attracted much attention. Here, we have investigated the genomic information of O. argus using IlluminaHiseq 4000 sequencing. The transcriptomes of O. argus were sequenced by Illumina technology. A total of 67,564 sequences from 79,500,964 paired-end reads were generated, 33,710 unigenes were annotated based on protein databases (NCBI nonredundant (NR) databases). In total, 7182 unigenes had the clusters of orthologous group (COG) classifications, 33,710 unigenes were assigned to 59 gene ontology (GO) terms. Further, a total of 21,464 simple sequence repeats (SSRs) from 67,564 unigenes and 113,518 single nucleotide polymorphism (SNP) sites among 335 Mclean reads were yielded for O. argus based on a transcriptome-wide search. The new transcriptome data which is presented in this study for O. argus will provide valuable information for gene discovery and downstream applications, such as phylogenetic analysis, gene-expression profiling and identification of genetic markers (SSRs andSNP).

Argus Ⅱ retinal prosthesis system:an update / 中华实验眼科杂志

Argus Ⅱ retinal prosthesis system (Argus Ⅱ;Second Sight Medical products,Sylmar,CA) is the first prosthetic retinal device approved for humanitarian use by both FDA in America and CE in Europe.It is a potential treatment for patients with end-stage outer retinal diseases.The system contains several parts,the camera first captures image and transfers it into electrical stimulating parameters conveying spatial-temporal information.The microelectrode epiretinal array then stimulate underlying bipolar cells and retinal ganglion cells.Patients present significant increases on levels of discrimination,target localization,motion detection and navigation.Possible adverse events include conjunctival erosion,hypotony and culture-negative presumed endophthalmitis.Future developments of the Argus Ⅱ system will not only comprise upgrading of image processing software and hardware,but also further disclosing retinal and visual signal processing mechanism.

Investigator Argus X-12 study on the population of northern Croatia

Abstract X chromosome STR typing has emerged recently as a powerful tool, complementary to autosomal STR typing, in solving complex forensic and missing person cases. Investigator® Argus X-12 is a commercial product that allows co-amplification of 12 X chromosomal markers belonging to four linkage groups (LGs). In this study, we analyzed by capillary electrophoresis blood samples from 100 females and 102 males from a population of northern Croatia. Statistical analysis included calculation of allele and haplotype frequencies, as well as forensic parameters. The most informative marker for the northern Croatia population was DXS10135 with PIC=0.9211 and a total of 27 alleles. The least polymorphic marker was DXS8378 with 6 alleles. The proportion of observed haplotypes from the number of possible haplotypes varied from 2.74-8.57% across all LGs, with LG1 being the most informative. Of the 11 tested world populations compared to the population of northern Croatia, significant differences in genetic distance (FST) were found for Greenlandic and all non-European populations. We found that all tested markers are in HWE and can thus be used for match probability calculation. Because of high combined power of discrimination in both men and women, Investigator® Argus X-12 is applicable for the northern Croatia population in routine forensic casework.

Study on anti-inflammatory activities of bile from Channa argus / 中国药理学通报

Aim To study the anti-inflammatory activity of the Channa argus bile.Methods The bile was isolated and purified by extraction and silica gel column chromatography.Then the compounds were identified by hydrogen and carbon spectra.The spleen lymphocytes proliferation assay and Lipopolysaccharide(LPS) induced mouse macrophage RAW264.7 releasing Nitrogen Monoxide(NO) experiment were used to evaluate the anti-inflammatory activity.Results Compound(C1) of sodium taurocholate and compound(C2) of sodium taurochenodeoxycholate were isolated by activity tracing.The cell relative viabilities of the two compounds on Concanavalin A(Con A) induced spleen lymphocytes proliferation assay were 65.9%±11.7% and 60.5%±9.4%, which were significantly different from the result of model group (P<0.01), respectively.The NO production of LPS-induced RAW264.7 release of NO was (16.4±1.9) μmol·L-1 and (15.5±1.7) μmol·L-1, which were significantly different from the result of model group(P<0.01).Conclusion Sodium taurocholate and sodium taurochenodeoxycholate from Channa argus perform the anti-inflammatory activities but have no cytotoxic effect on spleen lymphocytes and macrophage.

Development of an automated appendix generation system (ARGUS) for clinical study reports

Data handling and tabulation are a time-consuming job when writing appendices for clinical study reports. The authors have developed an automated appendix generation system (ARGUS) conforming to the CDISC/SDTM standard using SAS (version 9.3) and R (version 3.3.1: for PK plot generation). It consists of the one main program and three subprograms. The program runs to convert a database file into an appendix document with about 100 tables and plots in MS Word format within one min after pressing the submit button under common desktop environments. We found that tasks of constructing appendices for a typical 2×2 crossover design study that have taken our team about 8 days were completed within 6 or 7 hours using the ARGUS system.

Identification and expression analysis of two Wnt4 genes in the spotted scat (Scatophagus argus)

Background: WNT4 is a protein that plays a crucial role in ovarian differentiation and development in mammals, with a relatively well understood function in mammalian gonadal differentiation. The role of WNT4 in teleost fish; however, remains unclear. In the present study, cDNAs of Wnt4a and Wnt4b were cloned and characterized in the spotted scat. The expression patterns of two Wnt4 genes in the gonads at different stages of development and in fish after treatment with 17a-methyltestosterone (MT) were investigated. Results: The tissue distribution showed that Wnt4a was expressed in various tissues, including the gonads, gills, spleen, brain, and fin. Interestingly, Wnt4b not only was expressed in the gills, brain, and spleen, but also was obviously expressed in the ovary. During gonad development, Wnt4a was highly expressed in the testis at stage I and Wnt4b was mainly expressed in the ovary at stages II-III. After MT treatment, the mRNA expression of Wnt4a increased significantly up to 40 d, and the transcript level of Wnt4b decreased at 20 d. Conclusions: These results suggest that Wnt4a may be involved in gonad development and plays a role in the process of spermatogonial proliferation. Our results also demonstrate that Wnt4b is not only expressed in the nervous system, but also in the ovary and it may be involved in ovary development of the spotted scat.

Comparative study on Argus and artificial methods for MRI scanning of femoral head necrosis area / 医疗卫生装备

Objective To explore the advantages of Argus method by comparing the accuracy and timeliness of Argus and artificial methods for measuring femoral head necrosis area in MRI scanning.Methods Totally 17 patients (31 hips) were measured with Argus and artificial methods respectively for the necrosis area, and then the measuring results and time were compared, and the correlation was investigated between the results and the patients' pain degree, along with that between the results and the extent of femoral head collapse.Results The necrosis area ratios determined by Argus and artificial methods were (33.5±4.08)%and (34.6±4.06)%respectively, with no statistical difference between the ratios (P>0.05). The time consumed by artificial method was (21.3 ±3.62)min, significantly longer than (7.89 ±1.03)min by Argus method, with P<0.001. Regression analysis proved that the necrosis areas were positively correlated with the patients' pain degree, and the correlation coefficient by Argus method was 0.807 8, more than 0.740 9 by artificial method. The femoral heads of 11 cases(16 hips) collapsed in the follow-up period, the necrosis areas were positively correlated with the patients collapse level, but the correlation coefficient by Argus method was 0.783 8, more than 0.726 7 by artificial method.Conclusion Argus method gains high accuracy and timeliness when used in MRI scanning of femoral head necrosis area, and thus is worth popularizing clinically.

Variaciones en la condición nutricional de langostas Panulirus argus (Decapoda: Palinuridae) en la región este del Golfo de Batabanó, Cuba / Variations of the nutritional condition of lobsters Panulirus argus (Decapoda: Palinuridae) in Eastern region of the Gulf of Batabanó, Cuba

Variations of the nutritional condition of lobsters Panulirus argus (Decapoda: Palinuridae) in Eastern region of the Gulf of Batabanó, Cuba. Nutritional condition can affect survival and growth rate of crustaceans, and this is mostly affected by habitat conditions. This study describes the space-temporary nutritional changes in this commercially important species. With this aim, the variations in the nutritional condition (K) of lobsters from four zones (1, 2, 4 and 5) in the Gulf of Batabanó, Cuba, were determined. For this, the weight/length ratio (K=Pt/Lt) was calculated using animals captured in 1981 and 2010. The nutritional condition between areas and sexes, and years and sexes, was contrasted by a bifactorial ANOVA, and the overall length and weight of lobsters were compared using a t-Test for independent samples and unifactorial ANOVA. It was found that the nutritional condition was significantly greater in males than in females. In addition, significant variations between zones were detected for both years. Nutritional condition of lobsters from Zone five was the highest for 1981, while it was Zone two for 2010. Lobsters nutritional state showed significant variations between years, being greater in 1981 (2.34±0.84g/mm) than in 2010 (1.96±0.49g/mm). The inter-zones variations as well as the inter-annual ones seem to be related to the reported variations of the bottom type and the vegetation cover. Seasonal variations in the abundance and distribution of benthic organisms, that constitute food for lobsters, could also be influencing. The differences between sexes, however, were assumed as a consequence of the methodology used and the sexual dimorphism of the species. Due to other K estimation methods, that do not include morphometric measurements, these differences were not detected. We suggested that the P. argus nutritional condition is a good estimator of the habitat condition. Besides, according to the applied K estimation methodology, it was found that different groups of lobsters that have resemblant nutritional condition, did not necessarily observe similarities in the overall mean length or weight, so they could exist under different habitat conditions.

En Cuba, la región del Golfo de Batabanó es la más importante zona de pesca de langosta debido a que de ella se extrae anualmente alrededor del 70% de la captura nacional. Con el objetivo de determinar variaciones espacio-temporales en la condición nutricional (K) de langostas Panulirus argus del Golfo de Batabanó, Cuba, se calculó dicha condición mediante una relación pesolargo (K=Pt/Lt), para lo que se utilizaron ejemplares de cuatro zonas (uno, dos, cuatro y cinco) del este del golfo, capturados en los años 1981 y 2010. Se encontró que en todos los casos analizados la condición nutricional fue significativamente mayor en machos que en hembras. Se detectaron variaciones significativas entre zonas en 1981 y 2010. También entre años el estado nutricional de las langostas presenta variaciones significativas, de manera que en 1981 (2.34±0.84g/mm) fue mayor que en 2010 (1.96±0.49g/mm). Tanto las variaciones interzonales como las interanuales parecen estar relacionadas con variaciones reportadas en el tipo de fondo y la cobertura vegetal. Variaciones estacionales en la abundancia y distribución de organismos bentónicos que constituyen alimento para las langostas también podrían estar influyendo. Las diferencias entre sexos en cambio, se suponen consecuencia de la metodología utilizada y del dimorfismo sexual característico de esta especie, por cuanto otros métodos de estimación de K que no involucran mediciones morfométricas, no detectan estas diferencias.

Influencia del ciclo lunar en la captura de langosta espinosa Panulirus argus (Decapoda: Palinuridae) en el Golfo de Batabanó, Cuba

Influence of lunar cycle on catches of spiny lobster Panulirus argus (Decapoda: Palinuridae) in the Gulf of Batabanó, Cuba. Many biological processes such as reproductive and migratory behaviours have been associated with moon cycles. In this study, the nocturnal light levels associated with lunar cycle (INT) were correlated with daily catch rate of lobster P. argus, during seven lunar months of 2002 fishing period, to determine a possible relationship between these variables. The lobster catches were obtained from three fishing companies that develop their activities in the Gulf of Batabanó: EPICOL that fishes in Coloma area; PESCAHABANA in Batabanó area and PESCAISLA in Isla area. Daily catch per boat (CDB) was used as a measurement of daily catch variations (catch rate). The correlation was analyzed showing it in chronological graphs based on average of CDB per lunar phases, comparing lobster catch rate per lunar phases -with the Kruskal-Wallis test-. Spearman rank correlation coefficient and cross correlation techniques were also applied. Similarities between lobster catch rate and the lunar cycle were not found. Spearman rank correlation coefficient was modularly smaller than 0.1 in all cases and demonstrated quantitatively that correlation between CDB and INT does not exist. Kruskal-Wallis test detected differences only in Batabanó area but not when making the analyses for the whole Gulf of Batabanó. Finally, the cross correlations do not detected significance in any zone, as well. It is concluded that, in opposition to what other authors have reported, the catch rates of P. argus and the lunar cycle did not show significant correlation in the Gulf of Batabanó. This trend was independent of the fishing art, which varied according to the time of the year that was analyzed. Rev. Biol. Trop. 59 (1): 207-216. Epub 2011 March 01.

Muchos procesos biológicos tales como los comportamientos reproductivos y migratorios se han asociado con los ciclos de la luna. Con el objetivo de determinar la relación entre las capturas de langosta espinosa Panulirus argus (Decapoda: Palinuridae) y el ciclo lunar, en la zona del Golfo de Batabanó, se correlacionaron los niveles de iluminación nocturna del ciclo lunar (INT) con la captura diaria por barco (CDB) durante siete meses lunares correspondientes al período de pesca del 2002. Los datos de captura provinieron de las tres empresas pesqueras que realizan su actividad en la zona del Golfo de Batabanó. La relación entre el ciclo lunar y las capturas de langostas fue examinada mediante varios procedimientos estadísticos. Los primeros gráficos realizados, cualitativos, mostraron que no existe relación entre las tasas de captura y el ciclo lunar. Los coeficientes de Spearman calculados, modularmente menores que 0.1 en todos los casos, demostraron cuantitativamente que no existe correlación entre las mencionadas variables. La prueba de Kruskal-Wallis detectó diferencias sólo en una de las tres áreas estudiadas. Las correlaciones cruzadas no detectaron significación en ninguna de las zonas, con coeficientes de correlación cruzada modularmente inferiores a 0.1. A diferencia de lo reportado por otros autores, las capturas de P. argus y el ciclo lunar no presentan correlación significativa en el Golfo de Batabanó.

SEM STUDY ON THE MUCOSA OF DIGESTIVE TRACT OF OPHICEPHALUS ARGUS CANTOR / 解剖学报

The mucosal surface of the digestive tract of Ophicephalus argus Cantor was observed with scanning electron microscope. The ultrastructural features of buccopharynx, oesophagus, stomach and intestine were observed. There are many microridges on the surface of mucosal cells of the buccopharynx and oesophagus. On the surface of mucosal cells of the stomach and intestine exist many microvilli, and numerous goblet cells located in the mucosal epithelium of the buccopharynx, oesophagus and intestine. These structural features may be related to feeding habits of Ophicephalus; argus.